How to Query Ensembl BioMart with Python

Posted on Tue 19 January 2021 in Python • Tagged with Bioinformatics, Ensembl, BioMart, omics, data mining

Introduction

Recently, me and my colleagues wrote a manuscript involving meta-analysis of RNA-Seq studies. One of my tasks of this project was to perform a Gene Ontology (GO) enrichment analysis: “[G]iven a set of genes that are up-regulated under certain conditions, an enrichment analysis will find which GO …


Continue reading