Parsing the ClinVar XML file with pandas
Posted on Sat 04 February 2023 in Python • Tagged with pandas, ClinVar, genomics, variants
Introduction
ClinVar is one of the USA’s National Center for Biotechnology Information (NCBI) databases. ClinVar archives reports of relationships among human genetic variants and phenotypes (usually genetic disorders). Any organization, such as a laboratory, hospital, clinic etc can submit data to ClinVar. The core idea of ClinVar is aggregate …
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