Posted on Tue 06 October 2020 in Unix • Tagged with Bioinformatics, genomic variation, entrez-direct, EDirect
In a previous post, I showed how to configure an Ubuntu system to install Bioinformatics programs.
Now, using the environment I created, I will demonstrate a bash script, FastQ_to_Annotation.sh that takes next generation sequencing (NGS) raw reads from human whole genome sequencing as input and produces …
Posted on Mon 05 October 2020 in Unix • Tagged with Bioinformatics, genomic variation, entrez-direct, EDirect
In a previous post, I showed how to configure an Ubuntu system to install Bioinformatics programs.
Now, using the environment I created, I will demonstrate a bash script, FastQ_to_Annotation.sh that takes next generation sequencing (NGS) raw reads from human whole genome sequencing as input and produces …
Posted on Fri 02 October 2020 in Unix • Tagged with Bioinformatics, genomic variation, entrez-direct, EDirect
In a previous post, I showed how to configure an Ubuntu system to install Bioinformatics programs.
Now, using the environment I created, I will demonstrate a bash script, FastQ_to_Annotation.sh that takes next generation sequencing (NGS) raw reads from human whole genome sequencing as input and produces …
Posted on Thu 01 October 2020 in Unix • Tagged with Bioinformatics, genomic variation, entrez-direct, EDirect
In my previous post, I showed how to configure an Ubuntu system to install Bioinformatics programs.
Now, using the environment I created, I will demonstrate a bash script, FastQ_to_Annotation.sh that takes next generation sequencing (NGS) raw reads from human whole genome sequencing as input and produces …
Posted on Wed 30 September 2020 in Unix • Tagged with Bioinformatics
In this post I will show how I set up my Unix machine to use Bioinformatics programs and tools. I am currently using Ubuntu 20.04 LTS (Focal Fossa) 64-bit on a Windows Subsystem for Linux (WSL2) on Windows 10, so no GUI today!
The code and files used …