FASTQ to Annotation (Part 4)

Posted on Tue 06 October 2020 in Unix • Tagged with Bioinformatics, genomic variation, entrez-direct, EDirect

Introduction

In a previous post, I showed how to configure an Ubuntu system to install Bioinformatics programs.

Now, using the environment I created, I will demonstrate a bash script, FastQ_to_Annotation.sh that takes next generation sequencing (NGS) raw reads from human whole genome sequencing as input and produces …


Continue reading

FASTQ to Annotation (Part 3)

Posted on Mon 05 October 2020 in Unix • Tagged with Bioinformatics, genomic variation, entrez-direct, EDirect

Introduction

In a previous post, I showed how to configure an Ubuntu system to install Bioinformatics programs.

Now, using the environment I created, I will demonstrate a bash script, FastQ_to_Annotation.sh that takes next generation sequencing (NGS) raw reads from human whole genome sequencing as input and produces …


Continue reading

FASTQ to Annotation (Part 2)

Posted on Fri 02 October 2020 in Unix • Tagged with Bioinformatics, genomic variation, entrez-direct, EDirect

Introduction

In a previous post, I showed how to configure an Ubuntu system to install Bioinformatics programs.

Now, using the environment I created, I will demonstrate a bash script, FastQ_to_Annotation.sh that takes next generation sequencing (NGS) raw reads from human whole genome sequencing as input and produces …


Continue reading

FASTQ to Annotation (Part 1)

Posted on Thu 01 October 2020 in Unix • Tagged with Bioinformatics, genomic variation, entrez-direct, EDirect

Introduction

In my previous post, I showed how to configure an Ubuntu system to install Bioinformatics programs.

Now, using the environment I created, I will demonstrate a bash script, FastQ_to_Annotation.sh that takes next generation sequencing (NGS) raw reads from human whole genome sequencing as input and produces …


Continue reading